2BK0 Allergen date Feb 09, 2005
title Crystal Structure Of The Major Celery Allergen Api G 1
authors T.Schirmer, K.Hoffmann-Sommergruber, H.Breiteneder, Z.Markovic-
compound source
Molecule: Major Allergen Api G 1
Chain: A, B
Synonym: Celery Allergen Api G 1, Api G 1.0101, Api G I
Engineered: Yes
Organism_scientific: Apium Graveolens
Organism_common: Celery
Organism_taxid: 4045
Tissue: Bulb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pmw175
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.878 67.947 48.001 90.00 91.18 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein phosphatase inhibito...


  • Primary referenceCrystal structure of the major celery allergen Api g 1: molecular analysis of cross-reactivity., Schirmer T, Hoffimann-Sommergrube K, Susani M, Breiteneder H, Markovic-Housley Z, J Mol Biol. 2005 Sep 2;351(5):1101-9. PMID:16051263
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (2bk0.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (2bk0.pdb2.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2BK0
  • Likely Quarternary Molecular Structure file(s) for 2BK0
  • Structure Factors (54 Kb)
  • Retrieve 2BK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BK0 from S2C, [Save to disk]
  • Re-refined 2bk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BK0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BK0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bk0_B] [2bk0_A] [2bk0]
  • SWISS-PROT database: [P49372]
  • Domain organization of [ALL1_APIGR] by SWISSPFAM
  • Other resources with information on 2BK0
  • Community annotation for 2BK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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