2BKZ Transferase date Feb 23, 2005
title Structure Of Cdk2-Cyclin A With Pha-404611
authors R.Dalessio, A.Bargiottia, S.Metz, M.G.Brasca, A.Cameron, A.Ermoli A.Marsiglio, P.Polucci, F.Roletto, M.Tibolla, M.L.Vazquez, A.Vul P.Pevarello
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus

Molecule: Cyclin A2
Chain: B, D
Fragment: Residues 174-432 (C-Terminal Portion)
Synonym: Cyclin A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 62 2 2
R_factor 0.230 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.862 183.862 214.572 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand SBC, SO4 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceBenzodipyrazoles: a new class of potent CDK2 inhibitors., D'Alessio R, Bargiotti A, Metz S, Brasca MG, Cameron A, Ermoli A, Marsiglio A, Polucci P, Roletto F, Tibolla M, Vazquez ML, Vulpetti A, Pevarello P, Bioorg Med Chem Lett. 2005 Mar 1;15(5):1315-9. PMID:15713378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (2bkz.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2bkz.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2BKZ
  • CSU: Contacts of Structural Units for 2BKZ
  • Likely Quarternary Molecular Structure file(s) for 2BKZ
  • Structure Factors (510 Kb)
  • Retrieve 2BKZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BKZ from S2C, [Save to disk]
  • Re-refined 2bkz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BKZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BKZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BKZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bkz] [2bkz_B] [2bkz_A] [2bkz_D] [2bkz_C]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2BKZ: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2BKZ
  • Community annotation for 2BKZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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