2BMG Hydrolase date Mar 14, 2005
title Crystal Structure Of Factor Xa In Complex With 50
authors H.Schreuder, H.Matter, D.W.Will, M.Nazare, V.Laux, V.Wehner, P.Loe A.Liesum
compound source
Molecule: Coagulation Factor X
Chain: A
Fragment: Light Chain, Residues 126-178
Synonym: Blood Coagulation Factor Xa, Stuart Factor, Stuart Factor;
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood

Molecule: Coagulation Factor X
Chain: B
Fragment: Heavy Chain, Residues 235-468
Synonym: Blood Coagulation Factor Xa, Stuart Factor, Stuart Factor;
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.000 72.300 78.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA, I1H BindingDB enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural requirements for factor Xa inhibition by 3-oxybenzamides with neutral P1 substituents: combining X-ray crystallography, 3D-QSAR, and tailored scoring functions., Matter H, Will DW, Nazare M, Schreuder H, Laux V, Wehner V, J Med Chem. 2005 May 5;48(9):3290-312. PMID:15857135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2bmg.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2BMG
  • CSU: Contacts of Structural Units for 2BMG
  • Likely Quarternary Molecular Structure file(s) for 2BMG
  • Structure Factors (75 Kb)
  • Retrieve 2BMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BMG from S2C, [Save to disk]
  • Re-refined 2bmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BMG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BMG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bmg_B] [2bmg] [2bmg_A]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 2BMG: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 2BMG
  • Community annotation for 2BMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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