2BMJ Hydrolase date Mar 14, 2005
title Gtpase Like Domain Of Centaurin Gamma 1 (Human)
authors X.Yang, J.M.Elkins, M.Soundararajan, C.Arrowsmith, A.Edwards, M.S D.A.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Centaurin Gamma 1
Chain: A
Fragment: Gtpase Like Domain, Residues 66-241
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Plic-Sgc
symmetry Space Group: C 1 2 1
R_factor 0.163 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.151 31.104 81.928 90.00 102.22 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe centaurin gamma-1 GTPase-like domain functions as an NTPase., Soundararajan M, Yang X, Elkins JM, Sobott F, Doyle DA, Biochem J. 2007 Feb 1;401(3):679-88. PMID:17037982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2bmj.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2BMJ
  • Likely Quarternary Molecular Structure file(s) for 2BMJ
  • Structure Factors (60 Kb)
  • Retrieve 2BMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BMJ from S2C, [Save to disk]
  • Re-refined 2bmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BMJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BMJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bmj_A] [2bmj]
  • SWISS-PROT database: [Q99490]
  • Domain organization of [AGAP2_HUMAN] by SWISSPFAM
  • Domain found in 2BMJ: [small_GTPase ] by SMART
  • Other resources with information on 2BMJ
  • Community annotation for 2BMJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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