2BMV Apoflavodoxin from Helicobacter pylori date
authors Martinez-Julvez, M., Hermoso, J.A., Sancho, J., Perez-Dorado, I., Cremades, N., Bueno, M.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.11
ligand BEN, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCommon conformational changes in flavodoxins induced by FMN and anion binding: The structure of Helicobacter pylori apoflavodoxin., Martinez-Julvez M, Cremades N, Bueno M, Perez-Dorado I, Maya C, Cuesta-Lopez S, Prada D, Falo F, Hermoso JA, Sancho J, Proteins. 2007 Jul 10;. PMID:17623845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2bmv.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2BMV
  • CSU: Contacts of Structural Units for 2BMV
  • Likely Quarternary Molecular Structure file(s) for 2BMV
  • Structure Factors (61 Kb)
  • Retrieve 2BMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BMV from S2C, [Save to disk]
  • Re-refined 2bmv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BMV, from MSDmotif at EBI
  • Fold representative 2bmv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bmv_A] [2bmv]
  • SWISS-PROT database: [O25776]
  • Domain organization of [FLAV_HELPY] by SWISSPFAM
  • Other resources with information on 2BMV
  • Community annotation for 2BMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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