2BOP Transcription Dna date Jan 13, 1994
title Crystal Structure At 1.7 Angstroms Of The Bovine Papillomavi Dna-Binding Domain Bound To Its Dna Target
authors R.S.Hegde, S.R.Grossman, L.A.Laimins, P.B.Sigler
compound source
Molecule: Dna (5'- D(Cpcpgpapcpcpgpapcpgptpcpgpgptpcpg )-3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Protein (E2)
Chain: A
Engineered: Yes

Organism_scientific: Bovine Papillomavirus Type 1
Organism_taxid: 10559
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: R 3 2
length a length b length c angle alpha angle beta angle gamma
64.600 64.600 64.600 61.80 61.80 61.80
method X-Ray Diffractionresolution 1.70 Å
ligand YB enzyme
note 2BOP is a representative structure
related structures by homologous chain: 1JJH

Primary referenceCrystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target., Hegde RS, Grossman SR, Laimins LA, Sigler PB, Nature 1992 Oct 8;359(6395):505-12. PMID:1328886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2bop.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2BOP
  • CSU: Contacts of Structural Units for 2BOP
  • Likely Quarternary Molecular Structure file(s) for 2BOP
  • Retrieve 2BOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BOP from S2C, [Save to disk]
  • View 2BOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BOP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BOP, from MSDmotif at EBI
  • Genome occurence of 2BOP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bopa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 2bop from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bop] [2bop_B] [2bop_A]
  • SWISS-PROT database: [P03122]
  • Domain organization of [VE2_BPV1] by SWISSPFAM
  • Other resources with information on 2BOP
  • Community annotation for 2BOP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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