2BOT Contractile Protein date Apr 13, 2005
title Homology-Based Model Of The Dynein Coiled-Coil Stalk In The 22:19 Configuration.
authors I.R.Gibbons, J.E.Garbarino, C.E.Tan, S.L.Reck-Peterson, R.D.Vale, A.P.Carter
compound source
Molecule: Dynein Heavy Chain
Chain: A
Fragment: Stalk, Residues 3197-3296
Synonym: Dyhc, Cytoplasmic Dynein Heavy Chain 1, Dyhc1
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Dynein Heavy Chain
Chain: B
Fragment: Stalk, Residues 3398-3497
Synonym: Dyhc, Cytoplasmic Dynein Heavy Chain 1, Dyhc1

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2BOT
  • View 2BOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 2bot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [Q14204]
  • Domain organization of [DYHC1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2BOT with the sequences similar proteins can be viewed for 2BOT's classification [DYHC1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [DYHC1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2BOT
  • Community annotation for 2BOT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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