2BPM Transferase date Apr 21, 2005
title Structure Of Cdk2-Cyclin A With Pha-630529
authors A.Cameron, G.Fogliatto, P.Pevarello, M.G.Brasca, P.Orsini, G.Traq A.Longo, M.Nesi, F.Orzi, C.Piutti, P.Sansonna, M.Varasi, A.Vulpet F.Roletto, R.Alzani, M.Ciomei, C.Albanese, W.Pastori, A.Marsigli E.Pesenti, F.Fiorentini, J.R.Bischoff, C.Mercurio
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus

Molecule: Cyclin A2
Chain: B, D
Fragment: Residues 174-432 (C-Terminal Portion)
Synonym: Cyclin A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 62 2 2
R_factor 0.229 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.614 183.614 214.129 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand 529, SO4 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary reference3-Aminopyrazole inhibitors of CDK2/cyclin A as antitumor agents. 2. Lead optimization., Pevarello P, Brasca MG, Orsini P, Traquandi G, Longo A, Nesi M, Orzi F, Piutti C, Sansonna P, Varasi M, Cameron A, Vulpetti A, Roletto F, Alzani R, Ciomei M, Albanese C, Pastori W, Marsiglio A, Pesenti E, Fiorentini F, Bischoff JR, Mercurio C, J Med Chem. 2005 Apr 21;48(8):2944-56. PMID:15828833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (2bpm.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (2bpm.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2BPM
  • CSU: Contacts of Structural Units for 2BPM
  • Likely Quarternary Molecular Structure file(s) for 2BPM
  • Structure Factors (623 Kb)
  • Retrieve 2BPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BPM from S2C, [Save to disk]
  • Re-refined 2bpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BPM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BPM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bpm_D] [2bpm_C] [2bpm_B] [2bpm] [2bpm_A]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2BPM: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2BPM
  • Community annotation for 2BPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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