2BPY HIV-1 protease-inhibitor complex date
authors Munshi, S., Chen, Z.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 3IN enzyme
related structures by homologous chain: 1BWA, 1MET
A, B

Primary referenceRapid X-ray diffraction analysis of HIV-1 protease-inhibitor complexes: inhibitor exchange in single crystals of the bound enzyme., Munshi S, Chen Z, Li Y, Olsen DB, Fraley ME, Hungate RW, Kuo LC, Acta Crystallogr D Biol Crystallogr 1998 Sep 1;54 ( Pt 5):1053-60. PMID:9757136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2bpy.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2BPY
  • CSU: Contacts of Structural Units for 2BPY
  • Likely Quarternary Molecular Structure file(s) for 2BPY
  • Retrieve 2BPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BPY from S2C, [Save to disk]
  • View 2BPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BPY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BPY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bpya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2bpyb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bpy] [2bpy_A] [2bpy_B]
  • SWISS-PROT database: [P04587]
  • Domain organization of [POL_HV1B5] by SWISSPFAM
  • Other resources with information on 2BPY
  • Community annotation for 2BPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2BPY from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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