2BQZ Transferase date Apr 28, 2005
title Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8)
authors B.Xiao, C.Jing, G.Kelly, P.A.Walker, F.W.Muskett, T.A.Frenkiel, S.R.Martin, K.Sarma, D.Reinberg, S.J.Gamblin, J.R.Wilson
compound source
Molecule: Set8 Protein
Chain: A, E
Fragment: Set-Domain, Residues 192-352
Synonym: Histone-Lysine Methyltransferase Pr-Set7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Fragment: Residues 17-25

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.187 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
42.179 46.322 51.998 64.74 86.66 90.61
method X-Ray Diffractionresolution 1.5 Å
ligand MLZ, SAH enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1ZKK
A, E

Primary referenceSpecificity and mechanism of the histone methyltransferase Pr-Set7., Xiao B, Jing C, Kelly G, Walker PA, Muskett FW, Frenkiel TA, Martin SR, Sarma K, Reinberg D, Gamblin SJ, Wilson JR, Genes Dev. 2005 Jun 15;19(12):1444-54. Epub 2005 Jun 2. PMID:15933069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (2bqz.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2bqz.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2BQZ
  • CSU: Contacts of Structural Units for 2BQZ
  • Likely Quarternary Molecular Structure file(s) for 2BQZ
  • Retrieve 2BQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BQZ from S2C, [Save to disk]
  • View 2BQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BQZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BQZ, from MSDmotif at EBI
  • Fold representative 2bqz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bqz_F] [2bqz_B] [2bqz_A] [2bqz] [2bqz_E]
  • SWISS-PROT database: [P62805] [Q9NQR1]
  • Domain organization of [H4_HUMAN] [SETD8_HUMAN] by SWISSPFAM
  • Domain found in 2BQZ: [SET ] by SMART
  • Other resources with information on 2BQZ
  • Community annotation for 2BQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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