2BRS Lectin date May 11, 2005
title Embp Heparin Complex
authors G.J.Swaminathan, D.G.Myszka, P.S.Katsamba, L.E.Ohnuki, G.J.Gleic K.R.Acharya
compound source
Molecule: Eosinophil-Granule Major Basic Protein
Chain: A, B
Synonym: Mbp, Embp, Pregnancy Associated Major Basic Protei Proteoglycan 2 Bone Marrow, Bmpg;
Other_details: Heparin Sulphate
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Eosinophil
symmetry Space Group: C 1 2 1
R_factor 0.247 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.913 57.917 61.831 90.00 111.85 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand IDU, SGN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEosinophil-granule major basic protein, a C-type lectin, binds heparin., Swaminathan GJ, Myszka DG, Katsamba PS, Ohnuki LE, Gleich GJ, Acharya KR, Biochemistry. 2005 Nov 1;44(43):14152-8. PMID:16245931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2brs.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (2brs.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2BRS
  • CSU: Contacts of Structural Units for 2BRS
  • Likely Quarternary Molecular Structure file(s) for 2BRS
  • Structure Factors (136 Kb)
  • Retrieve 2BRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BRS from S2C, [Save to disk]
  • Re-refined 2brs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BRS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BRS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2brs_A] [2brs] [2brs_B]
  • SWISS-PROT database: [P13727]
  • Domain organization of [PRG2_HUMAN] by SWISSPFAM
  • Domain found in 2BRS: [CLECT ] by SMART
  • Other resources with information on 2BRS
  • Community annotation for 2BRS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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