2BV5 Hydrolase date Jun 22, 2005
title Crystal Structure Of The Human Protein Tyrosine Phosphatase 1.8a Resolution
authors J.E.Debreczeni, A.J.Barr, J.Eswaran, C.Smee, N.Burgess, O.Gileadi Delft, M.Sundstrom, C.Arrowsmith, A.Edwards, S.Knapp
compound source
Molecule: Tyrosine-Protein Phosphatase, Non-Receptor Type 5
Chain: A
Fragment: Catalytic Domain, Residues 256-537
Synonym: Human Protein Tyrosine Phosphatase Ptpn5
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: T7
Expression_system_plasmid: Plic Sgc
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.957 64.010 136.149 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, SCY, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases., Eswaran J, von Kries JP, Marsden B, Longman E, Debreczeni JE, Ugochukwu E, Turnbull A, Lee WH, Knapp S, Barr AJ, Biochem J. 2006 May 1;395(3):483-91. PMID:16441242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2bv5.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2BV5
  • CSU: Contacts of Structural Units for 2BV5
  • Likely Quarternary Molecular Structure file(s) for 2BV5
  • Structure Factors (433 Kb)
  • Retrieve 2BV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BV5 from S2C, [Save to disk]
  • Re-refined 2bv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BV5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BV5, from MSDmotif at EBI
  • Fold representative 2bv5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bv5] [2bv5_A]
  • SWISS-PROT database: [P54829]
  • Domain organization of [PTN5_HUMAN] by SWISSPFAM
  • Domain found in 2BV5: [PTPc ] by SMART
  • Other resources with information on 2BV5
  • Community annotation for 2BV5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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