2BV5	Hydrolase	date	Jun 22, 2005
title	Crystal Structure Of The Human Protein Tyrosine Phosphatase 1.8a Resolution
authors	J.E.Debreczeni, A.J.Barr, J.Eswaran, C.Smee, N.Burgess, O.Gileadi Delft, M.Sundstrom, C.Arrowsmith, A.Edwards, S.Knapp
compound		source
Molecule: Tyrosine-Protein Phosphatase, Non-Receptor Type 5 Chain: A Fragment: Catalytic Domain, Residues 256-537 Synonym: Human Protein Tyrosine Phosphatase Ptpn5 Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Brain Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector: T7 Expression_system_plasmid: Plic Sgc
symmetry	Space Group: P 21 21 21	R_factor 0.164 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.957 64.010 136.149 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL, SCY, SO4	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases., Eswaran J, von Kries JP, Marsden B, Longman E, Debreczeni JE, Ugochukwu E, Turnbull A, Lee WH, Knapp S, Barr AJ, Biochem J. 2006 May 1;395(3):483-91. PMID:16441242

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2bv5.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2BV5 CSU: Contacts of Structural Units for 2BV5 Likely Quarternary Molecular Structure file(s) for 2BV5 Structure Factors (433 Kb) Retrieve 2BV5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BV5 from S2C, [Save to disk] Re-refined 2bv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BV5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BV5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BV5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bv5] [2bv5_A] SWISS-PROT database: [P54829] Domain organization of [PTN5_HUMAN] by SWISSPFAM Domain found in 2BV5: [PTPc ] by SMART

Other resources with information on 2BV5

Community annotation for 2BV5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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