2BVA Transferase date Jun 23, 2005
title Crystal Structure Of The Human P21-Activated Kinase 4
authors J.E.Debreczeni, G.Bunkoczi, J.Eswaran, P.Filippakopoulos, S.Das, O.Fedorov, M.Sundstrom, C.Arrowsmith, A.Edwards, F.Von Delft, S.
compound source
Molecule: P21-Activated Kinase 4
Chain: A, B
Fragment: Kinase Domain, Residues 300-591
Ec: 2.7.1.37
Engineered: Yes
Other_details: Phosphorylation On Ser 474 A And Ser 474 B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R (Phage Resistant)
Expression_system_vector: Pgex6b
Expression_system_plasmid: Pgex6b-C001
symmetry Space Group: P 32
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.110 118.110 55.530 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SEP enzyme Transferase E.C.2.7.1.37 BRENDA
Primary referenceCrystal Structures of the p21-activated kinases PAK4, PAK5, and PAK6 reveal catalytic domain plasticity of active group II PAKs., Eswaran J, Lee WH, Debreczeni JE, Filippakopoulos P, Turnbull A, Fedorov O, Deacon SW, Peterson JR, Knapp S, Structure. 2007 Feb;15(2):201-13. PMID:17292838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2bva.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2bva.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2BVA
  • CSU: Contacts of Structural Units for 2BVA
  • Likely Quarternary Molecular Structure file(s) for 2BVA
  • Structure Factors (665 Kb)
  • Retrieve 2BVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BVA from S2C, [Save to disk]
  • Re-refined 2bva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BVA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BVA, from MSDmotif at EBI
  • Fold representative 2bva from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bva_A] [2bva] [2bva_B]
  • SWISS-PROT database: [O96013]
  • Domain organization of [PAK4_HUMAN] by SWISSPFAM
  • Domain found in 2BVA: [S_TKc ] by SMART
  • Other resources with information on 2BVA
  • Community annotation for 2BVA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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