2BWJ Transferase date Jul 14, 2005
title Structure Of Adenylate Kinase 5
authors G.Bunkoczi, P.Filippakopoulos, O.Fedorov, A.Jansson, E.Longman, E.Ugochukwu, S.Knapp, F.Von Delft, C.Arrowsmith, A.Edwards, M.Su J.Weigelt
compound source
Molecule: Adenylate Kinase 5
Chain: A, B, C, D, E, F
Synonym: Atp-Amp, Transphosphorylase5
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plic-Sgc
symmetry Space Group: P 61
R_factor 0.172 R_Free 0.213
length a length b length c angle alpha angle beta angle gamma
180.375 180.375 121.701 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand AMP, CL, SO4 enzyme Transferase E.C. BRENDA
F, A, D, C, E, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (2bwj.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (2bwj.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (2bwj.pdb3.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2BWJ
  • CSU: Contacts of Structural Units for 2BWJ
  • Likely Quarternary Molecular Structure file(s) for 2BWJ
  • Structure Factors (1224 Kb)
  • Retrieve 2BWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BWJ from S2C, [Save to disk]
  • Re-refined 2bwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BWJ, from MSDmotif at EBI
  • Fold representative 2bwj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bwj_C] [2bwj] [2bwj_D] [2bwj_E] [2bwj_B] [2bwj_F] [2bwj_A]
  • SWISS-PROT database: [Q9Y6K8]
  • Domain organization of [KAD5_HUMAN] by SWISSPFAM
  • Other resources with information on 2BWJ
  • Community annotation for 2BWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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