2BX8 Transport Protein date Jul 25, 2005
title Human Serum Albumin Complexed With Azapropazone
authors J.Ghuman, P.A.Zunszain, I.Petitpas, A.A.Bhattacharya, S.Curry
compound source
Molecule: Serum Albumin
Chain: A, B
Synonym: Human Serum Albumin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Plasma
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1
R_factor 0.237 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.200 54.950 119.903 81.21 91.07 64.75
method X-Ray Diffractionresolution 2.7 Å
ligand AZQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of the drug-binding specificity of human serum albumin., Ghuman J, Zunszain PA, Petitpas I, Bhattacharya AA, Otagiri M, Curry S, J Mol Biol. 2005 Oct 14;353(1):38-52. PMID:16169013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (2bx8.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (2bx8.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2BX8
  • CSU: Contacts of Structural Units for 2BX8
  • Likely Quarternary Molecular Structure file(s) for 2BX8
  • Structure Factors (231 Kb)
  • Retrieve 2BX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BX8 from S2C, [Save to disk]
  • Re-refined 2bx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BX8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BX8, from MSDmotif at EBI
  • Fold representative 2bx8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bx8_A] [2bx8_B] [2bx8]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 2BX8: [ALBUMIN ] by SMART
  • Alignments of the sequence of 2BX8 with the sequences similar proteins can be viewed for 2BX8's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2BX8
  • Community annotation for 2BX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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