2BY6 Hydrolase date Jul 29, 2005
title Is Radiation Damage Dependent On The Dose-Rate Used During Macromolecular Crystallography Data Collection
authors H.K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney
compound source
Molecule: Cationic Trypsin
Chain: X
Synonym: Beta-Trypsin
Organism_scientific: Bos Taurus
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.105 R_Free 0.139
length a length b length c angle alpha angle beta angle gamma
54.262 58.355 66.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.3 Å
ligand BAM, CA, GOL, SO4 enzyme Hydrolase E.C. BRENDA

Primary referenceIs radiation damage dependent on the dose rate used during macromolecular crystallography data collection?, Leiros HK, Timmins J, Ravelli RB, McSweeney SM, Acta Crystallogr D Biol Crystallogr. 2006 Feb;62(Pt 2):125-32. Epub 2006, Jan 18. PMID:16421442
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2by6.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2BY6
  • CSU: Contacts of Structural Units for 2BY6
  • Likely Quarternary Molecular Structure file(s) for 2BY6
  • Structure Factors (685 Kb)
  • Retrieve 2BY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BY6 from S2C, [Save to disk]
  • Re-refined 2by6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BY6, from MSDmotif at EBI
  • Fold representative 2by6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2by6] [2by6_X]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2BY6: [Tryp_SPc ] by SMART
  • Other resources with information on 2BY6
  • Community annotation for 2BY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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