2BZ2 Transcription Regulation date Aug 10, 2005
title Solution Structure Of Nelf E Rrm
authors K.Schweimer, J.N.Rao, L.Neumann, P.Rosch, B.M.Wohrl
compound source
Molecule: Negative Elongation Factor E
Chain: A
Fragment: Rna Recognition Motif, Residues 244-343
Synonym: Nelf E Rrm, Nelf-E, Rd Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: Pet 15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies on the RNA-recognition motif of NELF E, a cellular negative transcription elongation factor involved in the regulation of HIV transcription., Rao JN, Neumann L, Wenzel S, Schweimer K, Rosch P, Wohrl BM, Biochem J. 2006 Dec 15;400(3):449-56. PMID:16898873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (413 Kb) [Save to disk]
  • Biological Unit Coordinates (2bz2.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2BZ2
  • Original NMR restraints for 2BZ2 from PDB
  • Retrieve 2BZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BZ2 from S2C, [Save to disk]
    • View 2BZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BZ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BZ2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bz2_A] [2bz2]
  • SWISS-PROT database: [P18615]
  • Domain organization of [NELFE_HUMAN] by SWISSPFAM
  • Domain found in 2BZ2: [RRM ] by SMART
    • Other resources with information on 2BZ2
  • Community annotation for 2BZ2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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