2BZ6	Hydrolase	date	Aug 11, 2005
title	Orally Available Factor7a Inhibitor
authors	K.Groebke-Zbinden, U.Obst-Sander, K.Hilpert, H.Kuehne, D.W.Banne H.J.Boehm, M.Stahl, J.Ackermann, L.Alig, L.Weber, H.P.Wessel, M.A.Riederer, T.B.Tschopp, T.Lave
compound		source
Molecule: Blood Coagulation Factor Viia Chain: H Fragment: Factor Vii Heavy Chain, Residues 213-466 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Blood Coagulation Factor Viia Chain: L Fragment: Factor Vii Light Chain, Residues 150-202 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41 21 2	R_factor 0.166 R_Free 0.193
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.930 94.930 115.640 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.6 Å
ligand	346, CA, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
note	2BZ6 is a representative structure
Primary reference	Dose-dependent antithrombotic activity of an orally active tissue factor/factor VIIa inhibitor without concomitant enhancement of bleeding propensity., Groebke Zbinden K, Banner DW, Hilpert K, Himber J, Lave T, Riederer MA, Stahl M, Tschopp TB, Obst-Sander U, Bioorg Med Chem. 2006 Aug 1;14(15):5357-69. Epub 2006 Apr 18. PMID:16621574

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (2bz6.pdb1.gz) 106 Kb LPC: Ligand-Protein Contacts for 2BZ6 CSU: Contacts of Structural Units for 2BZ6 Likely Quarternary Molecular Structure file(s) for 2BZ6 Structure Factors (447 Kb) Retrieve 2BZ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BZ6 from S2C, [Save to disk] Re-refined 2bz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BZ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2BZ6

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2BZ6, from MSDmotif at EBI Fold representative 2bz6 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bz6_H] [2bz6_L] SWISS-PROT database: [P08709] Domain organization of [FA7_HUMAN] by SWISSPFAM Domains found in 2BZ6: [EGF] [Tryp_SPc ] by SMART Alignments of the sequence of 2BZ6 with the sequences similar proteins can be viewed for 2BZ6's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2BZ6

Community annotation for 2BZ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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