2BZ6 Hydrolase date Aug 11, 2005
title Orally Available Factor7a Inhibitor
authors K.Groebke-Zbinden, U.Obst-Sander, K.Hilpert, H.Kuehne, D.W.Banne H.J.Boehm, M.Stahl, J.Ackermann, L.Alig, L.Weber, H.P.Wessel, M.A.Riederer, T.B.Tschopp, T.Lave
compound source
Molecule: Blood Coagulation Factor Viia
Chain: H
Fragment: Factor Vii Heavy Chain, Residues 213-466
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Blood Coagulation Factor Viia
Chain: L
Fragment: Factor Vii Light Chain, Residues 150-202
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.166 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.930 94.930 115.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.6 Å
ligand 346, CA, SO4 BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
note 2BZ6 is a representative structure
Primary referenceDose-dependent antithrombotic activity of an orally active tissue factor/factor VIIa inhibitor without concomitant enhancement of bleeding propensity., Groebke Zbinden K, Banner DW, Hilpert K, Himber J, Lave T, Riederer MA, Stahl M, Tschopp TB, Obst-Sander U, Bioorg Med Chem. 2006 Aug 1;14(15):5357-69. Epub 2006 Apr 18. PMID:16621574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2bz6.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 2BZ6
  • CSU: Contacts of Structural Units for 2BZ6
  • Likely Quarternary Molecular Structure file(s) for 2BZ6
  • Structure Factors (447 Kb)
  • Retrieve 2BZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BZ6 from S2C, [Save to disk]
  • Re-refined 2bz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BZ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BZ6, from MSDmotif at EBI
  • Fold representative 2bz6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bz6] [2bz6_H] [2bz6_L]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 2BZ6: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 2BZ6 with the sequences similar proteins can be viewed for 2BZ6's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2BZ6
  • Community annotation for 2BZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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