2BZ8 Sh3 Domain date Aug 12, 2005
title N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
authors N.Cardenes, G.Moncalian, J.Bravo
compound source
Molecule: Sh3-Domain Kinase Binding Protein 1
Chain: A, B
Fragment: N-Terminal Sh3 Domain Residues 1-58
Synonym: Cbl-Interacting Protein Of 85kda, Human Src-Family Binding Protein 1, Hsb-1, Cd2 Binding Protein 3, Cd2bp3, Ci
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain, Kidney, Heart, Placenta, Lung, Liver, Skeleta Pancreas;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plys
Expression_system_plasmid: Pet29b

Molecule: Signal Transduction Protein Cbl-B Sh3-Binding Pro B, Ring Finger Protein 56, Cbl-B;
Chain: C
Fragment: Polyproline Rich Region Residues 902-912
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65
R_factor 0.221 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
51.158 51.158 97.472 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand NA enzyme
A, B

Primary referenceCbl promotes clustering of endocytic adaptor proteins., Jozic D, Cardenes N, Deribe YL, Moncalian G, Hoeller D, Groemping Y, Dikic I, Rittinger K, Bravo J, Nat Struct Mol Biol. 2005 Nov;12(11):972-9. PMID:16228008
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2bz8.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2BZ8
  • CSU: Contacts of Structural Units for 2BZ8
  • Structure Factors (78 Kb)
  • Retrieve 2BZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BZ8 from S2C, [Save to disk]
  • Re-refined 2bz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BZ8, from MSDmotif at EBI
  • Fold representative 2bz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bz8_A] [2bz8_C] [2bz8_B] [2bz8]
  • SWISS-PROT database: [Q13191] [Q96B97]
  • Domain organization of [CBLB_HUMAN] [SH3K1_HUMAN] by SWISSPFAM
  • Domain found in 2BZ8: [SH3 ] by SMART
  • Other resources with information on 2BZ8
  • Community annotation for 2BZ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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