2BZA Hydrolase date Mar 16, 1999
title Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
authors N.Ota, C.Stroupe, J.M.S.Ferreira-Da-Silva, S.S.Shah, M.Mares-Gui A.T.Brunger
compound source
Molecule: Protein (Trypsin)
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
Other_details: Bovine Pancreas Beta-Trypsin Purchased From Worthington Biochemical Corporation
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.401 63.722 69.174 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ABN, CA, CL, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1G36, 1OYQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNon-Boltzmann thermodynamic integration (NBTI) for macromolecular systems: relative free energy of binding of trypsin to benzamidine and benzylamine., Ota N, Stroupe C, Ferreira-da-Silva JM, Shah SA, Mares-Guia M, Brunger AT, Proteins 1999 Dec 1;37(4):641-53. PMID:10651279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2bza.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2BZA
  • CSU: Contacts of Structural Units for 2BZA
  • Likely Quarternary Molecular Structure file(s) for 2BZA
  • Structure Factors (174 Kb)
  • Retrieve 2BZA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BZA from S2C, [Save to disk]
  • Re-refined 2bza structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BZA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BZA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BZA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bzaa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bza_A] [2bza]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2BZA: [Tryp_SPc ] by SMART
  • Other resources with information on 2BZA
  • Community annotation for 2BZA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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