2C0M	Transport Protein	date	Sep 05, 2005
title	Apo Form Of The Tpr Domain Of The Pex5p Receptor
authors	W.A.Stanley, P.Kursula, M.Wilmanns
compound		source
Molecule: Peroxisomal Targeting Signal 1 Receptor Chain: A, B, C, F Fragment: Tpr Repeat Domain, Residues 284-602 Synonym: Pex5p, Peroxismore Receptor 1, Peroxin-5, Peroxisomal C-Terminal Targeting Signal Import Receptor, Pts1-Bp, Pts1 Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24d
symmetry	Space Group: P 1	R_factor 0.263 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.470 85.550 88.890 71.17 89.99 73.43
method	X-Ray Diffraction	resolution	2.50 Å
Primary reference	Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p., Stanley WA, Filipp FV, Kursula P, Schuller N, Erdmann R, Schliebs W, Sattler M, Wilmanns M, Mol Cell. 2006 Dec 8;24(5):653-63. PMID:17157249

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (2c0m.pdb1.gz) 49 Kb Biological Unit Coordinates (2c0m.pdb2.gz) 49 Kb Biological Unit Coordinates (2c0m.pdb3.gz) 48 Kb Biological Unit Coordinates (2c0m.pdb4.gz) 48 Kb CSU: Contacts of Structural Units for 2C0M Likely Quarternary Molecular Structure file(s) for 2C0M Structure Factors (373 Kb) Retrieve 2C0M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C0M from S2C, [Save to disk] Re-refined 2c0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C0M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C0M

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C0M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c0m_B] [2c0m_A] [2c0m_F] [2c0m_C] [2c0m] SWISS-PROT database: [P50542] Domain organization of [PEX5_HUMAN] by SWISSPFAM Domain found in 2C0M: [TPR ] by SMART

Other resources with information on 2C0M

Community annotation for 2C0M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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