2C28 Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 date
authors Irimia, A., Loukachevitch, L.V., Egli, M.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.27
ligand 8OG, CA, DG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEfficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4., Zang H, Irimia A, Choi JY, Angel KC, Loukachevitch LV, Egli M, Guengerich FP, J Biol Chem. 2006 Jan 27;281(4):2358-72. Epub 2005 Nov 22. PMID:16306039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2c28.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2C28
  • CSU: Contacts of Structural Units for 2C28
  • Likely Quarternary Molecular Structure file(s) for 2C28
  • Structure Factors (161 Kb)
  • Retrieve 2C28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C28 from S2C, [Save to disk]
  • Re-refined 2c28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C28
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C28, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c28_A] [2c28_P] [2c28_T] [2c28]
  • SWISS-PROT database: [Q97W02]
  • Domain organization of [DPO42_SULSO] by SWISSPFAM
  • Other resources with information on 2C28
  • Community annotation for 2C28 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science