2C2M Crystal structures of caspase-3 in complex with aza-peptide Michael acceptor inhibitors. date
authors Ganesan, R., Jelakovic, S., Ekici, O.D., Li, Z.Z., James, K.E., Asgian, J.L., Campbell, A., Mikolajczyk, J., Salvesen, G.S., Gruetter, M.G., Powers, J.C.
compound source
symmetry
R_factor
R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.94
ligand MX4, PHQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDesign, synthesis, and evaluation of aza-peptide Michael acceptors as selective and potent inhibitors of caspases-2, -3, -6, -7, -8, -9, and -10., Ekici OD, Li ZZ, Campbell AJ, James KE, Asgian JL, Mikolajczyk J, Salvesen GS, Ganesan R, Jelakovic S, Grutter MG, Powers JC, J Med Chem. 2006 Sep 21;49(19):5728-49. PMID:16970398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2c2m.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 2C2M
  • CSU: Contacts of Structural Units for 2C2M
  • Likely Quarternary Molecular Structure file(s) for 2C2M
  • Structure Factors (156 Kb)
  • Retrieve 2C2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C2M from S2C, [Save to disk]
  • Re-refined 2c2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C2M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C2M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c2m_A] [2c2m] [2c2m_B] [2c2m_I] [2c2m_C]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 2C2M: [CASc ] by SMART
  • Other resources with information on 2C2M
  • Community annotation for 2C2M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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