2C4G Transferase date Oct 19, 2005
title Structure Of Cdk2-Cyclin A With Pha-533514
authors A.Cameron, G.Fogliatto, P.Pevarello, D.Fancelli, A.Vulpetti, R.Am M.Villa, V.Pittala, M.Ciomei, C.Mercurio, J.R.Bischoff, F.Rolett M.Varasi, M.G.Brasca
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus

Molecule: Cyclin A2
Chain: B, D
Fragment: Residues 173-432 (C-Terminal Portion)
Synonym: Cyclin A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 62 2 2
R_factor 0.233 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
191.985 191.985 205.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand 514, SO4 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary reference3-Amino-1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazoles: a new class of CDK2 inhibitors., Pevarello P, Fancelli D, Vulpetti A, Amici R, Villa M, Pittala V, Vianello P, Cameron A, Ciomei M, Mercurio C, Bischoff JR, Roletto F, Varasi M, Brasca MG, Bioorg Med Chem Lett. 2006 Feb 15;16(4):1084-90. Epub 2005 Nov 14. PMID:16290148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (2c4g.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (2c4g.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2C4G
  • CSU: Contacts of Structural Units for 2C4G
  • Likely Quarternary Molecular Structure file(s) for 2C4G
  • Structure Factors (461 Kb)
  • Retrieve 2C4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C4G from S2C, [Save to disk]
  • Re-refined 2c4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C4G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C4G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c4g_A] [2c4g_C] [2c4g_B] [2c4g] [2c4g_D]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 2C4G: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 2C4G
  • Community annotation for 2C4G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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