2C5D	Signaling Protein Receptor	date	Oct 26, 2005
title	Structure Of A Minimal Gas6-Axl Complex
authors	T.Sasaki, P.G.Knyazev, N.J.Clout, Y.Cheburkin, W.Goehring, A.Ullr R.Timpl, E.Hohenester
compound		source
Molecule: Growth-Arrest-Specific Protein 6 Precursor Chain: A, B Fragment: Lg Domains, Residues 207-624 Synonym: Gas-6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: 293-Ebna Expression_system_vector: Pcep-Pu
Molecule: Tyrosine-Protein Kinase Receptor Ufo Chain: C, D Fragment: Ig Domains, Residues 26-220 Synonym: Axl Oncogene Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pask-Iba12
symmetry	Space Group: P 61	R_factor 0.241 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 292.951 292.951 63.951 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	CA, NAG, NI, SO4	enzyme	Transferase E.C.2.7.1.112 BRENDA
Primary reference	Structural basis for Gas6-Axl signalling., Sasaki T, Knyazev PG, Clout NJ, Cheburkin Y, Gohring W, Ullrich A, Timpl R, Hohenester E, EMBO J. 2006 Jan 11;25(1):80-7. Epub 2005 Dec 15. PMID:16362042

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (2c5d.pdb1.gz) 178 Kb LPC: Ligand-Protein Contacts for 2C5D CSU: Contacts of Structural Units for 2C5D Likely Quarternary Molecular Structure file(s) for 2C5D Structure Factors (369 Kb) Retrieve 2C5D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C5D from S2C, [Save to disk] Re-refined 2c5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C5D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C5D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C5D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c5d_A] [2c5d_D] [2c5d_C] [2c5d_B] [2c5d] SWISS-PROT database: [Q14393] [P30530] Domain organization of [GAS6_HUMAN] [UFO_HUMAN] by SWISSPFAM Domains found in 2C5D: [IG] [LamG ] by SMART

Other resources with information on 2C5D

Community annotation for 2C5D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---