2C6Q Oxidoreductase date Nov 11, 2005
title Crystal Structure Of Human Guanosine Monophosphate Reductase In Complex With Imp And Nadph
authors P.Kursula, P.Stenmark, C.Arrowsmith, H.Berglund, A.Edwards, M.Ehn S.Graslund, M.Hammarstrom, B.M.Hallberg, T.Kotenyova, P.Nilsson D.Ogg, C.Persson, J.Sagemark, H.Schuler, M.Sundstrom, A.Thorsell J.Weigelt, P.Nordlund
compound source
Molecule: Gmp Reductase 2
Chain: A, B, C, D, E, F, G, H
Synonym: Guanosine Monophosphate Reductase 2, Guanosine 5'- Monophosphate Oxidoreductase 2;
Ec: 1.7.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28a-Lic
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.676 141.366 164.318 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand IMP, NDP enzyme Oxidoreductase E.C.1.7.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCofactor mobility determines reaction outcome in the IMPDH and GMPR (beta-alpha)(8) barrel enzymes., Patton GC, Stenmark P, Gollapalli DR, Sevastik R, Kursula P, Flodin S, Schuler H, Swales CT, Eklund H, Himo F, Nordlund P, Hedstrom L, Nat Chem Biol. 2011 Oct 30;7(12):950-8. doi: 10.1038/nchembio.693. PMID:22037469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (459 Kb) [Save to disk]
  • Biological Unit Coordinates (2c6q.pdb1.gz) 228 Kb
  • Biological Unit Coordinates (2c6q.pdb2.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 2C6Q
  • CSU: Contacts of Structural Units for 2C6Q
  • Likely Quarternary Molecular Structure file(s) for 2C6Q
  • Structure Factors (2599 Kb)
  • Retrieve 2C6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C6Q from S2C, [Save to disk]
  • Re-refined 2c6q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C6Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C6Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c6q_D] [2c6q_E] [2c6q_F] [2c6q_G] [2c6q_H] [2c6q_A] [2c6q_C] [2c6q_B] [2c6q]
  • SWISS-PROT database: [Q9P2T1]
  • Domain organization of [GMPR2_HUMAN] by SWISSPFAM
  • Domain found in 2C6Q: [IMPDH ] by SMART
  • Other resources with information on 2C6Q
  • Community annotation for 2C6Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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