2C9O	Hydrolase	date	Dec 14, 2005
title	3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
authors	P.M.Matias, S.Gorynia, P.Donner, M.A.Carrondo
compound		source
Molecule: Ruvb-Like 1 Chain: A, B, C Synonym: Ruvbl1,49-Kda Tata Box-Binding Protein-Interacting 49 Kda Tbp-Interacting Protein, Tip49a, Pontin 52,Nuclear M Protein 238,Nmp 238,54 Kda Erythrocyte Cytosolic Protein, E Tip60-Associated Protein 54-Alpha, Tap54-Alpha; Ec: 3.6.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 6	R_factor 0.206 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 207.080 207.080 60.710 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ADP	enzyme	Hydrolase E.C.3.6.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B DNA helicase activity transcription coactivator ac... 5'-3' DNA helicase activity
Primary reference	Crystal structure of the human AAA+ protein RuvBL1., Matias PM, Gorynia S, Donner P, Carrondo MA, J Biol Chem. 2006 Dec 15;281(50):38918-29. Epub 2006 Oct 23. PMID:17060327

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk] Biological Unit Coordinates (2c9o.pdb1.gz) 379 Kb Biological Unit Coordinates (2c9o.pdb2.gz) 329 Kb LPC: Ligand-Protein Contacts for 2C9O CSU: Contacts of Structural Units for 2C9O Likely Quarternary Molecular Structure file(s) for 2C9O Structure Factors (1031 Kb) Retrieve 2C9O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C9O from S2C, [Save to disk] Re-refined 2c9o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C9O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C9O

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C9O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c9o] [2c9o_A] [2c9o_C] [2c9o_B] SWISS-PROT database: [Q9Y265] Domain organization of [RUVB1_HUMAN] by SWISSPFAM Domain found in 2C9O: [AAA ] by SMART

Other resources with information on 2C9O

Community annotation for 2C9O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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