2C9Y Transferase date Dec 15, 2005
title Structure Of Human Adenylate Kinase 2
authors G.Bunkoczi, P.Filippakopoulos, J.E.Debreczeni, A.Turnbull, E.Papagrigoriou, P.Savitsky, S.Colebrook, F.Von Delft, C.Arrows A.Edwards, M.Sundstrom, J.Weigelt, S.Knapp
compound source
Molecule: Adenylate Kinase Isoenzyme 2, Mitochondrial
Chain: A
Synonym: Atp-Amp Transphosphorylase
Ec: 2.7.4.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plic-Sgc
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.042 49.260 127.001 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand B4P, EDO enzyme Transferase E.C.2.7.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2c9y.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2C9Y
  • CSU: Contacts of Structural Units for 2C9Y
  • Likely Quarternary Molecular Structure file(s) for 2C9Y
  • Structure Factors (225 Kb)
  • Retrieve 2C9Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C9Y from S2C, [Save to disk]
  • Re-refined 2c9y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C9Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C9Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2C9Y, from MSDmotif at EBI
  • Fold representative 2c9y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c9y] [2c9y_A]
  • SWISS-PROT database: [P54819]
  • Domain organization of [KAD2_HUMAN] by SWISSPFAM
  • Other resources with information on 2C9Y
  • Community annotation for 2C9Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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