2CAS THE CANINE PARVOVIRUS EMPTY CAPSID STRUCTURE date
authors Wu, H., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
note 2CAS (Molecule of the Month:pdb125)
related structures by homologous chain: 1C8D, 4DPV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe canine parvovirus empty capsid structure., Wu H, Rossmann MG, J Mol Biol 1993 Sep 20;233(2):231-44. PMID:8377200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2cas.pdb1.gz) 5187 Kb
  • CSU: Contacts of Structural Units for 2CAS
  • Likely Quarternary Molecular Structure file(s) for 2CAS
  • Retrieve 2CAS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CAS from S2C, [Save to disk]
  • View 2CAS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CAS
  • VIPERdb: visual, structural and computational analysis of 2CAS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CAS, from MSDmotif at EBI
  • Genome occurence of 2CAS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cas__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cas] [2cas_A]
  • SWISS-PROT database: [Q11213]
  • Domain organization of [COAT_PAVCB] by SWISSPFAM
  • Other resources with information on 2CAS
  • Community annotation for 2CAS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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