OCA Atlas for 2CB3

2CB3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, MLD

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, A, B, C

Primary reference

Structural basis for preferential recognition of diaminopimelic acid-type peptidoglycan by a subset of peptidoglycan recognition proteins., Lim JH, Kim MS, Kim HE, Yano T, Oshima Y, Aggarwal K, Goldman WE, Silverman N, Kurata S, Oh BH, J Biol Chem. 2006 Mar 24;281(12):8286-95. Epub 2006 Jan 20. PMID:16428381

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]

Biological Unit Coordinates (2cb3.pdb1.gz) 31 Kb

Biological Unit Coordinates (2cb3.pdb2.gz) 32 Kb

Biological Unit Coordinates (2cb3.pdb3.gz) 32 Kb

Biological Unit Coordinates (2cb3.pdb4.gz) 31 Kb

LPC: Ligand-Protein Contacts for 2CB3

CSU: Contacts of Structural Units for 2CB3

Likely Quarternary Molecular Structure file(s) for 2CB3

Structure Factors (810 Kb)

Retrieve 2CB3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2CB3 from S2C, [Save to disk]

Re-refined 2cb3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CB3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cb3] [2cb3_A] [2cb3_B] [2cb3_C] [2cb3_D]

SWISS-PROT database: [Q9VXN9]

Domains found in 2CB3: [Ami_2] [PGRP ] by SMART

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