2CB9 Hydrolase date Jan 03, 2006
title Crystal Structure Of The Thioesterase Domain Of The Fengycin Biosynthesis Cluster
authors S.Samel, M.A.Marahiel, L.O.Essen
compound source
Molecule: Fengycin Synthetase
Chain: A
Fragment: Thioesterase Domain Residues 1043-1274
Engineered: Yes
Other_details: Recombinant Fragment Of The Nrps Synthetase (Q1043-H1274)
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: F29-3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_variant: Prep4
Expression_system_vector: Pqe-60
symmetry Space Group: P 61
R_factor 0.150 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.354 72.354 96.333 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY enzyme
note 2CB9 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe thioesterase domain of the fengycin biosynthesis cluster: a structural base for the macrocyclization of a non-ribosomal lipopeptide., Samel SA, Wagner B, Marahiel MA, Essen LO, J Mol Biol. 2006 Jun 16;359(4):876-89. Epub 2006 Apr 18. PMID:16697411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2cb9.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2CB9
  • CSU: Contacts of Structural Units for 2CB9
  • Likely Quarternary Molecular Structure file(s) for 2CB9
  • Structure Factors (190 Kb)
  • Retrieve 2CB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CB9 from S2C, [Save to disk]
  • Re-refined 2cb9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CB9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CB9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cb9] [2cb9_A]
  • SWISS-PROT database: [Q45563]
  • Domain organization of [Q45563_BACSU] by SWISSPFAM
  • Other resources with information on 2CB9
  • Community annotation for 2CB9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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