2CBZ Transport date Jan 10, 2006
title Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1
authors O.Ramaen, N.Leulliot, C.Sizun, N.Ulryck, O.Pamlard, J.Y.Lallemand, H.Van Tilbeurgh, E.Jacquet
compound source
Molecule: Multidrug Resistance-Associated Protein 1
Chain: A
Fragment: Nbd1 Domain, Residues 642-871
Synonym: Mrp1, Atp-Binding Cassette Sub- Family C Member 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28a
symmetry Space Group: P 31
R_factor 0.160 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.560 65.560 64.612 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.5 Å
ligand ATP, MG enzyme
Primary referenceStructure of the human multidrug resistance protein 1 nucleotide binding domain 1 bound to Mg2+/ATP reveals a non-productive catalytic site., Ramaen O, Leulliot N, Sizun C, Ulryck N, Pamlard O, Lallemand JY, Tilbeurgh H, Jacquet E, J Mol Biol. 2006 Jun 16;359(4):940-9. Epub 2006 May 2. PMID:16697012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2cbz.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2CBZ
  • CSU: Contacts of Structural Units for 2CBZ
  • Likely Quarternary Molecular Structure file(s) for 2CBZ
  • Structure Factors (793 Kb)
  • Retrieve 2CBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CBZ from S2C, [Save to disk]
  • Re-refined 2cbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CBZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CBZ, from MSDmotif at EBI
  • Fold representative 2cbz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cbz] [2cbz_A]
  • SWISS-PROT database: [P33527]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [MRP1_HUMAN] by SWISSPFAM
  • Domain found in 2CBZ: [AAA ] by SMART
  • Other resources with information on 2CBZ
  • Community annotation for 2CBZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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