2CCQ	Glycoprotein	date	Jan 17, 2006
title	The Pub Domain Functions As A P97 Binding Module In Human Pe Glycanase.
authors	M.D.Allen, A.Buchberger, M.Bycroft
compound		source
Molecule: Peptide N-Glycanase Homolog Chain: A Fragment: N-Terminal, Residues 8-106 Synonym: P97 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_vector: Prseta
symmetry	Space Group: P 65	R_factor 0.193 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.516 73.516 33.001 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	GOL	enzyme
Primary reference	The PUB domain functions as a p97 binding module in human peptide N-glycanase., Allen MD, Buchberger A, Bycroft M, J Biol Chem. 2006 Sep 1;281(35):25502-8. Epub 2006 Jun 28. PMID:16807242

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (2ccq.pdb1.gz) 19 Kb LPC: Ligand-Protein Contacts for 2CCQ CSU: Contacts of Structural Units for 2CCQ Likely Quarternary Molecular Structure file(s) for 2CCQ Structure Factors (96 Kb) Retrieve 2CCQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CCQ from S2C, [Save to disk] Re-refined 2ccq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CCQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CCQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CCQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ccq_A] [2ccq] SWISS-PROT database: [Q96IV0] Domain organization of [NGLY1_HUMAN] by SWISSPFAM Domain found in 2CCQ: [PUG ] by SMART

Other resources with information on 2CCQ

Community annotation for 2CCQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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