2CCV Lectin date Jan 18, 2006
title Structure Of Helix Pomatia Agglutinin With Zinc And N-Acetyl Galactoseamine (Galnac)
authors J.F.Sanchez, J.Lescar, V.Chazalet, A.Audfray, C.Gautier, J.Gagno C.Breton, A.Imberty, E.P.Mitchell
compound source
Molecule: Helix Pomatia Agglutinin
Chain: A
Other_details: Glycolysis Site At N34 With Glucoseamine Bou
Organism_scientific: Helix Pomatia
Organism_common: Roman Snail
Organism_taxid: 6536
Organ: Albumin Gland
symmetry Space Group: H 3 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.450 48.450 286.120 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand A2G, ACT, GOL, NAG, ZN enzyme
note 2CCV is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical and structural analysis of Helix pomatia agglutinin. A hexameric lectin with a novel fold., Sanchez JF, Lescar J, Chazalet V, Audfray A, Gagnon J, Alvarez R, Breton C, Imberty A, Mitchell EP, J Biol Chem. 2006 Jul 21;281(29):20171-80. Epub 2006 May 16. PMID:16704980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2ccv.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 2CCV
  • CSU: Contacts of Structural Units for 2CCV
  • Likely Quarternary Molecular Structure file(s) for 2CCV
  • Structure Factors (367 Kb)
  • Retrieve 2CCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CCV from S2C, [Save to disk]
  • Re-refined 2ccv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CCV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CCV, from MSDmotif at EBI
  • Fold representative 2ccv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ccv_A] [2ccv]
  • SWISS-PROT database: [Q2F1K8]
  • Domain organization of [Q2F1K8_HELPO] by SWISSPFAM
  • Other resources with information on 2CCV
  • Community annotation for 2CCV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science