2CD0 Immune System date Mar 08, 1999
title Structure Of Human Lambda-6 Light Chain Dimer Wil
authors P.R.Pokkuluri, A.Solomon, D.T.Weiss, F.J.Stevens, M.Schiffer
compound source
Molecule: Protein (Bence-Jones Protein Wil, A Variable Domain From Lambda-6 Type Immunoglobulin Light Chain);
Chain: A, B
Fragment: Variable Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5lambda
Expression_system_vector: Pet-27b(+)
symmetry Space Group: H 3 2
R_factor 0.289 R_Free 0.351
length a length b length c angle alpha angle beta angle gamma
147.900 147.900 46.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1AQK, 1PEW
A, B

Primary referenceTertiary structure of human lambda 6 light chains., Pokkuluri PR, Solomon A, Weiss DT, Stevens FJ, Schiffer M, Amyloid 1999 Sep;6(3):165-71. PMID:10524280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2cd0.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2CD0
  • Likely Quarternary Molecular Structure file(s) for 2CD0
  • Structure Factors (328 Kb)
  • Retrieve 2CD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CD0 from S2C, [Save to disk]
  • Re-refined 2cd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CD0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CD0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cd0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2cd0b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2cd0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cd0] [2cd0_A] [2cd0_B]
  • SWISS-PROT database: [P06317]
  • Domain organization of [LV603_HUMAN] by SWISSPFAM
  • Domain found in 2CD0: [IGv ] by SMART
  • Other resources with information on 2CD0
  • Community annotation for 2CD0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science