OCA Atlas for 2CDP

2CDP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AAL, CA, CL, EDO, GAL

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, C, A

Primary reference

Family 6 carbohydrate binding modules in beta-agarases display exquisite selectivity for the non-reducing termini of agarose chains., Henshaw J, Horne-Bitschy A, van Bueren AL, Money VA, Bolam DN, Czjzek M, Ekborg NA, Weiner RM, Hutcheson SW, Davies GJ, Boraston AB, Gilbert HJ, J Biol Chem. 2006 Jun 23;281(25):17099-107. Epub 2006 Apr 6. PMID:16601125

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]

Biological Unit Coordinates (2cdp.pdb1.gz) 27 Kb

Biological Unit Coordinates (2cdp.pdb2.gz) 26 Kb

Biological Unit Coordinates (2cdp.pdb3.gz) 26 Kb

Biological Unit Coordinates (2cdp.pdb4.gz) 27 Kb

LPC: Ligand-Protein Contacts for 2CDP

CSU: Contacts of Structural Units for 2CDP

Likely Quarternary Molecular Structure file(s) for 2CDP

Structure Factors (1019 Kb)

Retrieve 2CDP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2CDP from S2C, [Save to disk]

Re-refined 2cdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CDP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cdp] [2cdp_A] [2cdp_B] [2cdp_C] [2cdp_D]

SWISS-PROT database: [Q6DN99]

Domain found in 2CDP: [CBD_IV ] by SMART

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