2CDZ Transferase date Jan 31, 2006
title Crystal Structure Of The Human P21-Activated Kinase 4 In Com Cgp74514a
authors J.E.Debreczeni, E.Ugochukwu, J.Eswaran, P.Filippakopoulos, S.Das O.Fedorov, M.Sundstrom, C.Arrowsmith, J.Weigelt, A.Edwards, F.Vo S.Knapp
compound source
Molecule: Serinethreonine-Protein Kinase Pak 4
Chain: A
Fragment: Kinase Domain, Residues 291-591
Synonym: Human P21-Activated Kinase 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pgex-6p2
Expression_system_plasmid: Pgex6b-C001
symmetry Space Group: P 43 21 2
R_factor 0.200 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
145.817 145.817 42.382 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 23D, CL, SEP, SO4 enzyme Transferase E.C. BRENDA
Primary referenceCrystal Structures of the p21-activated kinases PAK4, PAK5, and PAK6 reveal catalytic domain plasticity of active group II PAKs., Eswaran J, Lee WH, Debreczeni JE, Filippakopoulos P, Turnbull A, Fedorov O, Deacon SW, Peterson JR, Knapp S, Structure. 2007 Feb;15(2):201-13. PMID:17292838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2cdz.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2CDZ
  • CSU: Contacts of Structural Units for 2CDZ
  • Likely Quarternary Molecular Structure file(s) for 2CDZ
  • Structure Factors (277 Kb)
  • Retrieve 2CDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CDZ from S2C, [Save to disk]
  • Re-refined 2cdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CDZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CDZ, from MSDmotif at EBI
  • Fold representative 2cdz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cdz_A] [2cdz]
  • SWISS-PROT database: [O96013]
  • Domain organization of [PAK4_HUMAN] by SWISSPFAM
  • Domain found in 2CDZ: [S_TKc ] by SMART
  • Other resources with information on 2CDZ
  • Community annotation for 2CDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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