2CFD	Oxidoreductase	date	Feb 20, 2006
title	Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon Link Enantiomer, Data Set 3)
authors	D.B.Langley, A.P.Duff, H.C.Freeman, J.M.Guss, G.A.Juda, D.M.Doole S.M.Contakes, N.W.Halpern-Manners, A.R.Dunn, H.B.Gray
compound		source
Molecule: Phenylethylamine Oxidase Chain: A, B Fragment: Agao Holoenzyme, Residues 3-638 Synonym: Amine Oxidase, Copper Amine Oxidase Ec: 1.4.3.6 Engineered: Yes Other_details: Residue A382 Was An Active Site Tyrosine Res Which Was Autocatalytically Modified To Become Tpq		Organism_scientific: Arthrobacter Globiformis Organism_taxid: 1665 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet-3c (Novagen) Expression_system_plasmid: Pagao2
symmetry	Space Group: C 1 2 1	R_factor 0.194 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 192.287 62.857 158.171 90.00 117.47 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CU, GOL, NA, R4A, SO4, TPQ	enzyme	Oxidoreductase E.C.1.4.3.6 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Enantiomer-specific binding of ruthenium(II) molecular wires by the amine oxidase of Arthrobacter globiformis., Langley DB, Brown DE, Cheruzel LE, Contakes SM, Duff AP, Hilmer KM, Dooley DM, Gray HB, Guss JM, Freeman HC, J Am Chem Soc. 2008 Jun 25;130(25):8069-78. Epub 2008 May 29. PMID:18507382

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk] Biological Unit Coordinates (2cfd.pdb1.gz) 379 Kb LPC: Ligand-Protein Contacts for 2CFD CSU: Contacts of Structural Units for 2CFD Likely Quarternary Molecular Structure file(s) for 2CFD Structure Factors (2776 Kb) Retrieve 2CFD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2CFD from S2C, [Save to disk] Re-refined 2cfd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2CFD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CFD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2CFD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2cfd] [2cfd_A] [2cfd_B] SWISS-PROT database: [P46881] Domain organization of [PAOX_ARTGO] by SWISSPFAM

Other resources with information on 2CFD

Community annotation for 2CFD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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