2CFI Oxidoreductase date Feb 21, 2006
title The Hydrolase Domain Of Human 10-Fthfd In Complex With 6- Formyltetrahydropterin
authors P.Kursula, P.Stenmark, C.Arrowsmith, A.Edwards, M.Ehn, S.Graslund M.Hammarstrom, M.Hallberg, T.Kotenyova, P.Nilsson-Ehle, P.Nordl D.J.Ogg, C.Persson, J.Sagemark, H.Schuler, M.Sundstrom, A.Thorse J.Weigelt
compound source
Molecule: 10-Formyltetrahydrofolate Dehydrogenase
Chain: A
Fragment: Hydrolase Domain, Residues 1-307
Synonym: 10-Fthfdh, Aldehyde Dehydrogenase 1 Family Member
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
108.140 64.440 58.870 90.00 98.79 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand SO4, ZZZ enzyme Oxidoreductase E.C. BRENDA

Primary referenceStructures of the hydrolase domain of human 10-formyltetrahydrofolate dehydrogenase and its complex with a substrate analogue., Kursula P, Schuler H, Flodin S, Nilsson-Ehle P, Ogg DJ, Savitsky P, Nordlund P, Stenmark P, Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1294-9. Epub 2006, Oct 18. PMID:17057331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2cfi.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2CFI
  • CSU: Contacts of Structural Units for 2CFI
  • Likely Quarternary Molecular Structure file(s) for 2CFI
  • Structure Factors (256 Kb)
  • Retrieve 2CFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CFI from S2C, [Save to disk]
  • Re-refined 2cfi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CFI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CFI, from MSDmotif at EBI
  • Fold representative 2cfi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cfi] [2cfi_A]
  • SWISS-PROT database: [O75891]
  • Domain organization of [FTHFD_HUMAN] by SWISSPFAM
  • Other resources with information on 2CFI
  • Community annotation for 2CFI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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