2CI3 Hydrolase date Mar 17, 2006
title Crystal Structure Of Dimethylarginine Dimethylaminohydrolase Form I
authors D.Frey, O.Braun, C.Briand, M.Vasak, M.G.Grutter
compound source
Molecule: Ng, Ng-Dimethylarginine Dimethylaminohydrolase 1
Chain: A
Synonym: Dimethylarginine Dimethylaminohydrolase I, Dimethylargininase 1, Ddahi, Ddah-1;
Ec: 3.5.3.18
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Brain
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.461 79.619 44.879 90.00 108.52 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Hydrolase E.C.3.5.3.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the mammalian NOS regulator dimethylarginine dimethylaminohydrolase: A basis for the design of specific inhibitors., Frey D, Braun O, Briand C, Vasak M, Grutter MG, Structure. 2006 May;14(5):901-11. PMID:16698551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2ci3.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 2CI3
  • Likely Quarternary Molecular Structure file(s) for 2CI3
  • Structure Factors (207 Kb)
  • Retrieve 2CI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CI3 from S2C, [Save to disk]
  • Re-refined 2ci3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CI3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CI3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ci3_A] [2ci3]
  • SWISS-PROT database: [P56965]
  • Domain organization of [DDAH1_BOVIN] by SWISSPFAM
  • Other resources with information on 2CI3
  • Community annotation for 2CI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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