2CIJ Hydrolase date Mar 21, 2006
title Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) With Bo Methionine
authors C.Barinka, A.Plechanovova, L.Rulisek, P.Mlcochova, P.Majer, B.S.S R.Hilgenfeld, J.R.Mesters, J.Konvalinka
compound source
Molecule: Glutamate Carboxypeptidase II
Chain: A
Fragment: Residues 44-750
Synonym: Membrane Glutamate Carboxypeptidase, Mgcp, N-Acety Alpha-Linked Acidic Dipeptidase I, Naaladase I, Pteroylpoly Glutamate Carboxypeptidase, Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hydrolase 1, Prostate-Specif Membrane Antigen, Psma, Psm;
Ec: 3.4.17.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Tissue: Nerve
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider'S S2 Cells
Expression_system_plasmid: Pmtbipv5-His A
symmetry Space Group: I 2 2 2
R_factor 0.172 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.692 130.777 160.303 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BMA, CA, CL, MAN, MET, NAG, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of glutamate carboxypeptidase II, a drug target in neuronal damage and prostate cancer., Mesters JR, Barinka C, Li W, Tsukamoto T, Majer P, Slusher BS, Konvalinka J, Hilgenfeld R, EMBO J. 2006 Mar 22;25(6):1375-84. Epub 2006 Feb 9. PMID:16467855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (2cij.pdb1.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 2CIJ
  • CSU: Contacts of Structural Units for 2CIJ
  • Likely Quarternary Molecular Structure file(s) for 2CIJ
  • Structure Factors (609 Kb)
  • Retrieve 2CIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CIJ from S2C, [Save to disk]
  • Re-refined 2cij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CIJ, from MSDmotif at EBI
  • Fold representative 2cij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cij_A] [2cij]
  • SWISS-PROT database: [Q04609]
  • Domain organization of [FOLH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2CIJ
  • Community annotation for 2CIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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