2CJZ Hydrolase date Apr 10, 2006
title Crystal Structure Of The C472s Mutant Of Human Protein Tyros Phosphatase Ptpn5 (Step, Striatum Enriched Phosphatase) In With Phosphotyrosine
authors J.E.Debreczeni, A.J.Barr, J.Eswaran, C.Smee, N.Burgess, O.Gileadi P.Savitsky, M.Sundstrom, C.Arrowsmith, A.Edwards, J.Weigelt, S.K F.Von Delft
compound source
Molecule: Human Protein Tyrosine Phosphatase Ptpn5
Chain: A
Fragment: Phosphatase Domain, Residues 258-539
Synonym: Protein-Tyrosine Phosphatase Striatum-Enriched, St Neural- Specific Protein-Tyrosine Phosphatase;
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: T7
Expression_system_plasmid: Plic Sgc
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.342 64.348 100.781 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, PTR enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2cjz.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2CJZ
  • CSU: Contacts of Structural Units for 2CJZ
  • Likely Quarternary Molecular Structure file(s) for 2CJZ
  • Structure Factors (498 Kb)
  • Retrieve 2CJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CJZ from S2C, [Save to disk]
  • Re-refined 2cjz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CJZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CJZ, from MSDmotif at EBI
  • Fold representative 2cjz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cjz_A] [2cjz]
  • SWISS-PROT database: [P54829]
  • Domain organization of [PTN5_HUMAN] by SWISSPFAM
  • Domain found in 2CJZ: [PTPc ] by SMART
  • Other resources with information on 2CJZ
  • Community annotation for 2CJZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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