2CKJ Oxidoreductase date Apr 19, 2006
title Human Milk Xanthine Oxidoreductase
authors A.R.Pearson, B.L.J.Godber, R.Eisenthal, G.L.Taylor, R.Harrison
compound source
Molecule: Xanthine Oxidoreductase
Chain: A, B, C, D
Synonym: Xdh, Xanthine Dehydrogenase, Xo, Xanthine Oxidase, Oxidoreductase;
Ec: 1.1.1.204, 1.2.3.2, 1.17.3.2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Breast Milk
Other_details: Milk Kindly Donated By Mothers At The Intens Baby Units At The Bristol Royal Infirmary And Southmead Hos Bristol, Uk
symmetry Space Group: P 31 2 1
R_factor 0.178 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
197.734 197.734 285.538 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.59 Å
ligand ACY, FAD, FES, GOL, PO4 enzyme Oxidoreductase E.C.1.1.1.204 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • electron transfer activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk]
  • Biological Unit Coordinates (2ckj.pdb1.gz) 392 Kb
  • Biological Unit Coordinates (2ckj.pdb2.gz) 400 Kb
  • Biological Unit Coordinates (2ckj.pdb3.gz) 398 Kb
  • LPC: Ligand-Protein Contacts for 2CKJ
  • CSU: Contacts of Structural Units for 2CKJ
  • Likely Quarternary Molecular Structure file(s) for 2CKJ
  • Retrieve 2CKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CKJ from S2C, [Save to disk]
  • View 2CKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CKJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CKJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ckj_B] [2ckj_C] [2ckj] [2ckj_D] [2ckj_A]
  • SWISS-PROT database: [P47989]
  • Domain organization of [XDH_HUMAN] by SWISSPFAM
  • Domains found in 2CKJ: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 2CKJ
  • Community annotation for 2CKJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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