2CLQ Transferase date Apr 28, 2006
title Structure Of Mitogen-Activated Protein Kinase Kinase Kinase
authors G.Bunkoczi, E.Salah, O.Fedorov, A.Pike, O.Gileadi, F.Von Delft, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, S.Knapp
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 5
Chain: A, B
Fragment: Kinase Domain Residues 659-951
Synonym: Map3k5, Mapkerk Kinase Kinase 5, Mek Kinase 5, Me Apoptosis Signal-Regulating Kinase 1, Ask-1;
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plic-Sgc1
symmetry Space Group: P 65 2 2
R_factor 0.201 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.606 78.606 423.279 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand STU BindingDB enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Functional Characterization of the Human Protein Kinase ASK1., Bunkoczi G, Salah E, Filippakopoulos P, Fedorov O, Muller S, Sobott F, Parker SA, Zhang H, Min W, Turk BE, Knapp S, Structure. 2007 Oct;15(10):1215-26. PMID:17937911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2clq.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (2clq.pdb2.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2CLQ
  • CSU: Contacts of Structural Units for 2CLQ
  • Likely Quarternary Molecular Structure file(s) for 2CLQ
  • Structure Factors (470 Kb)
  • Retrieve 2CLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CLQ from S2C, [Save to disk]
  • Re-refined 2clq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2CLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CLQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CLQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2clq_B] [2clq_A] [2clq]
  • SWISS-PROT database: [Q99683]
  • Domain organization of [M3K5_HUMAN] by SWISSPFAM
  • Domain found in 2CLQ: [S_TKc ] by SMART
  • Other resources with information on 2CLQ
  • Community annotation for 2CLQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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