2CLY Hydrolase date May 03, 2006
title Subcomplex Of The Stator Of Bovine Mitochondrial Atp Synthas
authors V.Kane Dickson, J.A.Silvester, I.M.Fearnley, A.G.W.Leslie, J.E.W
compound source
Molecule: Atp Synthase B Chain, Mitochondrial
Chain: A, D
Fragment: Stator Subcomplex
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Pet

Molecule: Atp Synthase D Chain, Mitochondrial
Chain: B, E
Fragment: Stator Subcomplex
Ec: 3.6.3.14
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Pet

Molecule: Atp Synthase Coupling Factor 6, Mitochondrial
Chain: C, F
Fragment: Stator Subcomplex
Ec: 3.6.3.14
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.499 79.354 115.665 90.00 93.08 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceOn the structure of the stator of the mitochondrial ATP synthase., Dickson VK, Silvester JA, Fearnley IM, Leslie AG, Walker JE, EMBO J. 2006 Jun 21;25(12):2911-8. Epub 2006 Jun 8. PMID:16791136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2cly.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (2cly.pdb2.gz) 51 Kb
  • CSU: Contacts of Structural Units for 2CLY
  • Likely Quarternary Molecular Structure file(s) for 2CLY
  • Retrieve 2CLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CLY from S2C, [Save to disk]
  • View 2CLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CLY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cly_A] [2cly_F] [2cly_D] [2cly] [2cly_B] [2cly_C] [2cly_E]
  • SWISS-PROT database: [P13619] [P13620] [P02721]
  • Domain organization of [AT5F1_BOVIN] [ATP5H_BOVIN] [ATP5J_BOVIN] by SWISSPFAM
  • Other resources with information on 2CLY
  • Community annotation for 2CLY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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