2COM Oxidoreductase date May 18, 2005
title The Solution Structure Of The Swirm Domain Of Human Lsd1
authors N.Tochio, T.Umehara, S.Koshiba, M.Inoue, A.Tanaka, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Lysine-Specific Histone Demethylase 1
Chain: A
Fragment: Swirm Domain
Synonym: Amine Oxidase Flavin Containing Domain Protein 2, Aof2 Protein, Braf35-Hdac Complex Protein Bhc110;
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lsd1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040401-21
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the SWIRM domain of human histone demethylase LSD1., Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Watanabe S, Tomo Y, Hanada M, Ikari M, Sato M, Terada T, Nagase T, Ohara O, Shirouzu M, Tanaka A, Kigawa T, Yokoyama S, Structure. 2006 Mar;14(3):457-68. PMID:16531230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2COM
  • Original NMR restraints for 2COM from PDB
  • Retrieve 2COM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2COM from S2C, [Save to disk]
  • View 2COM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2COM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2COM, from MSDmotif at EBI
  • Fold representative 2com from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2com] [2com_A]
  • SWISS-PROT database: [O60341]
  • Domain organization of [KDM1_HUMAN] by SWISSPFAM
  • Other resources with information on 2COM
  • Community annotation for 2COM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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