2CPE Oncoprotein date May 19, 2005
title Solution Structure Of The Rna Recognition Motif Of Ewing Sarcoma(Ews) Protein
authors T.Nagata, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rna-Binding Protein Ews
Chain: A
Fragment: Rna Recognition Motif
Synonym: Ews Oncogene, Ewing Sarcoma Breakpoint Region 1 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ewsr1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040329-86
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (558 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2CPE
  • Original NMR restraints for 2CPE from PDB
  • Retrieve 2CPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CPE from S2C, [Save to disk]
  • View 2CPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CPE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CPE, from MSDmotif at EBI
  • Fold representative 2cpe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cpe_A] [2cpe]
  • SWISS-PROT database: [Q01844]
  • Domain organization of [EWS_HUMAN] by SWISSPFAM
  • Domain found in 2CPE: [RRM ] by SMART
  • Alignments of the sequence of 2CPE with the sequences similar proteins can be viewed for 2CPE's classification [EWS_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EWS_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2CPE
  • Community annotation for 2CPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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