2CQF Transcription date May 19, 2005
title Solution Structure Of The Zinc-Finger Domain In Lin-28
authors T.Someya, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rna-Binding Protein Lin-28
Chain: A
Fragment: Zinc-Finger (130-192)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lin28
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041101-01
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2CQF
  • CSU: Contacts of Structural Units for 2CQF
  • Original NMR restraints for 2CQF from PDB
  • Retrieve 2CQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CQF from S2C, [Save to disk]
  • View 2CQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CQF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CQF, from MSDmotif at EBI
  • Fold representative 2cqf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cqf] [2cqf_A]
  • SWISS-PROT database: [Q9H9Z2]
  • Domain organization of [LN28A_HUMAN] by SWISSPFAM
  • Domain found in 2CQF: [ZnF_C2HC ] by SMART
  • Other resources with information on 2CQF
  • Community annotation for 2CQF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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