2CRA Gene Regulation date May 20, 2005
title Solution Structure Of The Homeobox Domain Of Human Homeo Box B13
authors K.Seimiya, F.Hayashi, T.Nagashima, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Homeobox Protein Hox-B13
Chain: A
Fragment: Homeobox (Residues 1-70)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hoxb13
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040607-07
Other_details: Cell Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2CRA
  • Original NMR restraints for 2CRA from PDB
  • Retrieve 2CRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CRA from S2C, [Save to disk]
  • View 2CRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CRA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2CRA, from MSDmotif at EBI
  • Fold representative 2cra from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cra] [2cra_A]
  • SWISS-PROT database: [Q92826]
  • Domain organization of [HXB13_HUMAN] by SWISSPFAM
  • Domain found in 2CRA: [HOX ] by SMART
  • Alignments of the sequence of 2CRA with the sequences similar proteins can be viewed for 2CRA's classification [HXB13_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HXB13_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2CRA
  • Community annotation for 2CRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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