OCA Atlas for 2CRH

2CRH

Signaling Protein

date

May 20, 2005

title

Solution Structure Of The Sh2 Domain Of Human Proto-Oncogene Vav1

authors

H.Endo, F.Hayashi, M.Yoshida, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)

compound

source

Molecule: Vav Proto-Oncogene
Chain: A
Fragment: Sh2 (Residues 1-138)
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vav1, Vav
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040517-08
Other_details: Cell Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (726 Kb) [Save to disk]

Biological Unit Coordinates (2crh.pdb1.gz) 36 Kb

CSU: Contacts of Structural Units for 2CRH

Original NMR restraints for 2CRH from PDB

Retrieve 2CRH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2CRH from S2C, [Save to disk]

View 2CRH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2CRH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2CRH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2crh_A] [2crh]

SWISS-PROT database: [P15498]

Domain organization of [VAV_HUMAN] by SWISSPFAM

Domain found in 2CRH: [SH2 ] by SMART

Other resources with information on 2CRH

Community annotation for 2CRH at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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